minor documentation updates

Doxyfile

@@ -574,7 +574,7 @@ WARN_LOGFILE           =
 # directories like "/usr/src/myproject". Separate the files or directories
 # with spaces.
 
-INPUT                  = FDTD tools
+INPUT                  = . FDTD tools
 
 # This tag can be used to specify the character encoding of the source files
 # that doxygen parses. Internally doxygen uses the UTF-8 encoding, which is

FDTD/engine_multithread.h

@@ -86,7 +86,7 @@ public:
 	virtual void Init();
 	virtual void Reset();
 
-	//!Iterate a number of timesteps
+	//! Iterate \a iterTS number of timesteps
 	virtual bool IterateTS(unsigned int iterTS);
 
 protected:

FDTD/excitation.h

@@ -68,9 +68,9 @@ protected:
 
 	//! Calculate a custom signal
 	virtual void CalcCustomExcitation(double f0, int nTS, string signal);
-	//! Calculate an excitation with center of f0 and the half bandwidth fc
+	//! Calculate an excitation with center of \a f0 and the half bandwidth \a fc
 	virtual void CalcGaussianPulsExcitation(double f0, double fc, int nTS);
-	//! Calculate a sinusoidal excitation with frequency f0 and a duration of nTS number of timesteps
+	//! Calculate a sinusoidal excitation with frequency \a f0 and a duration of \a nTS number of timesteps
 	virtual void CalcSinusExcitation(double f0, int nTS);
 	//! Calculate a dirac impuls excitation
 	virtual void CalcDiracPulsExcitation();

FDTD/operator.h

@@ -56,9 +56,9 @@ public:
 	double GetTimestep() const {return dT;};
 	double GetNumberCells() const;
 
-	//! Returns the number of lines as needed for post-processing etc. (for the engine, use GetOriginalNumLines)
+	//! Returns the number of lines as needed for post-processing etc. (for the engine, use GetOriginalNumLines())
 	virtual unsigned int GetNumberOfLines(int ny) const {return numLines[ny];}
-	//! Returns the number of lines as needed for the engine etc. (for post-processing etc, use GetOriginalNumLines)
+	//! Returns the number of lines as needed for the engine etc. (for post-processing etc, use GetOriginalNumLines())
 	virtual unsigned int GetOriginalNumLines(int ny) const {return numLines[ny];}
 
 	virtual void ShowStat() const;
@@ -77,9 +77,9 @@ public:
 	//! Get the mesh delta times the grid delta for a 3D position (unit is meter)
 	virtual double GetMeshDelta(int n, const unsigned int* pos, bool dualMesh=false) const;
 
-	//! Get the disc line in n direction (in drawing units)
+	//! Get the disc line in \a n direction (in drawing units)
 	virtual double GetDiscLine(int n, int pos, bool dualMesh=false) const;
-	//! Get the disc line in n direction (in drawing units)
+	//! Get the disc line in \a n direction (in drawing units)
 	virtual double GetDiscLine(int n, unsigned int pos, bool dualMesh=false) const;
 
 	virtual bool SnapToMesh(double* coord, unsigned int* uicoord, bool lower=false, bool* inside=NULL);
@@ -124,7 +124,7 @@ protected:
 	double CalcTimestep_Var1();
 	double CalcTimestep_Var3();
 
-	//! Calc operator at certain pos
+	//! Calc operator at certain \a pos
 	virtual void Calc_ECOperatorPos(int n, unsigned int* pos);
 
 	//EC elements, internal only!

FDTD/operator_ext_mur_abc.h

@@ -28,7 +28,7 @@ public:
 	Operator_Ext_Mur_ABC(Operator* op);
 	~Operator_Ext_Mur_ABC();
 
-	//! Define the direction of this ABC: ny=0,1,2 -> x,y,z and if at bottom_ny -> e.g. x=0 or x=end
+	//! Define the direction of this ABC: \a ny=0,1,2 -> x,y,z and if at bottom_ny -> e.g. x=0 or x=end
 	void SetDirection(int ny, bool top_ny);
 
 	virtual bool BuildExtension();

FDTD/operator_sse.cpp

@@ -43,7 +43,7 @@ Operator_sse::~Operator_sse()
 
 Engine* Operator_sse::CreateEngine() const
 {
-	//!create a special sse-engine
+	//! create a special sse-engine
 	Engine_sse* eng = Engine_sse::New(this);
 	return eng;
 }

FDTD/operator_sse_compressed.cpp

@@ -58,7 +58,7 @@ Engine* Operator_SSE_Compressed::CreateEngine() const
 {
 	if (m_Use_Compression==false)
 	{
-		//!create a default sse-engine
+		//! create a default sse-engine
 		Engine_sse* eng = Engine_sse::New(this);
 		return eng;
 	}

FDTD/operator_sse_compressed.h

@@ -50,14 +50,14 @@ protected:
 	bool m_Max_Compression; //reached maximal compression?
 	unsigned int m_Op_Count;
 
-	//! Compression ratio threshold. If this ratio is exceeded, compression will be disabled. \sa SetCompressionThreshold
+	//! Compression ratio threshold. If this ratio is exceeded, compression will be disabled. \sa SetCompressionThreshold()
 	double m_Compression_Threshold; //default is 0.8
 
 	virtual void Init();
 	virtual void Reset();
 	virtual void InitOperator();
 
-	//! Compression cache size, default is 1000 \sa SetCacheSize
+	//! Compression cache size, default is 1000 \sa SetCacheSize()
 	unsigned int m_max_fifo;
 
 	bool CompareOperators(unsigned int pos1[3], unsigned int pos2[3]);

FDTD/processfields.h

@@ -36,13 +36,13 @@ public:
 
 	virtual void DefineStartStopCoord(double* dstart, double* dstop);
 
-	//! Define a field dump sub sampling rate for a given direction (default: dir = -1 means all directions)
+	//! Define a field dump sub sampling rate for a given direction (default: \a dir = -1 means all directions)
 	virtual void SetSubSampling(unsigned int subSampleRate, int dir=-1);
 
-	//! Used file pattern e.g. pattern="tmp/efield_" --> "tmp/efield_000045.vtk" for timestep 45 or "tmp/efield_2.40000e9.vtk" for 2.4GHz E-field dump. (VTK FileType only) \sa SetFileType
+	//! Used file pattern e.g. pattern="tmp/efield_" --> "tmp/efield_000045.vtk" for timestep 45 or "tmp/efield_2.40000e9.vtk" for 2.4GHz E-field dump. (VTK FileType only) \sa SetFileType()
 	void SetFilePattern(string fp) {m_filename=filePattern=fp;}
 
-	//! Set the filename for a hdf5 data group file (HDF5 FileType only) \sa SetFileType
+	//! Set the filename for a hdf5 data group file (HDF5 FileType only) \sa SetFileType()
 	void SetFileName(string fn) {m_filename=fn;}
 
 	//! Define the Dump-Mode
@@ -61,9 +61,9 @@ public:
 	static void WriteVTKCartesianGridHeader(ofstream &file, double const* const* discLines, unsigned int const* numLines, unsigned int precision=12, string header_info = string(), double discLines_scaling = 1);
 	//! Write a vtk header to an already open file (cylindrical grid)
 	static void WriteVTKCylindricalGridHeader(ofstream &file, double const* const* discLines, unsigned int const* numLines, unsigned int precision=12, string header_info = string(), double discLines_scaling = 1);
-	//! Append a vtk vector array to an already open vtk file, write a header first! \sa WriteVTKHeader
+	//! Append a vtk vector array to an already open vtk file, write a header first! \sa WriteVTKHeader()
 	static void WriteVTKVectorArray(ofstream &file, string name, FDTD_FLOAT const* const* const* const* array, unsigned int const* numLines, unsigned int precision=12);
-	//! Append a vtk scalar array to an already open vtk file, write a header first! \sa WriteVTKHeader
+	//! Append a vtk scalar array to an already open vtk file, write a header first! \sa WriteVTKHeader()
 	static void WriteVTKScalarArray(ofstream &file, string name, FDTD_FLOAT const* const* const* array, unsigned int const* numLines, unsigned int precision=12);
 
 	static bool DumpVectorArray2VTK(ofstream &file, string name, FDTD_FLOAT const* const* const * const* array, double const* const* discLines, unsigned int const* numLines, unsigned int precision=12, string header_info = string(), MeshType meshT = CARTESIAN_MESH, double discLines_scaling = 1);

FDTD/processing.h

@@ -49,9 +49,9 @@ public:
 	bool CheckTimestep();
 	virtual int Process() {return GetNextInterval();}
 
-	//! If Disabled Process() will do nothing...
+	//! If disabled, Process() will do nothing...
 	virtual void SetEnable(bool val) {Enabled=val;}
-	//! If Disabled Process() will do nothing...
+	//! If disabled, Process() will do nothing...
 	virtual bool GetEnable() const {return Enabled;}
 
 	virtual void SetWeight(double weight) {m_weight=weight;}

openems.cpp

@@ -73,8 +73,8 @@ void openEMS::Reset()
 }
 
 //! \brief processes a command line argument
-//! returns true if argument is known
+//! \return true if argument is known
-//! returns false if argument is unknown
+//! \return false if argument is unknown
 bool openEMS::parseCommandLineArgument( const char *argv )
 {
 	if (!argv)