close all;
clear all;
clc

EPS0 = 8.85418781762e-12;
MUE0 = 1.256637062e-6;
C0 = 1/sqrt(EPS0*MUE0);

f0 = 0.5e9;

abs_length = 250;
length = 6000;
port_dist = 1500;
rad_i  = 100;
rad_a = 230;
partial = 0.25;
max_mesh = 15;
max_alpha = max_mesh;
N_alpha = ceil(rad_a * 2*pi * partial / max_alpha);
mesh_res = [max_mesh 2*pi*partial/N_alpha max_mesh];

openEMS_Path = [pwd() '/../../']
openEMS_opts = '';
openEMS_opts = [openEMS_opts ' --disable-dumps'];
% openEMS_opts = [openEMS_opts ' --debug-material'];

Sim_Path = 'tmp';
Sim_CSX = 'coax.xml';

mkdir(Sim_Path);

%setup FDTD parameter
FDTD = InitCylindricalFDTD(1e5,1e-4);
FDTD = SetGaussExcite(FDTD,f0,f0);
BC = [0 0 1 1 0 0];
FDTD = SetBoundaryCond(FDTD,BC);

%setup CSXCAD geometry
CSX = InitCSX();
mesh.x = rad_i : mesh_res(1) : rad_a;
mesh.y = -pi*partial-mesh_res(2)/2 : mesh_res(2) : pi*partial+mesh_res(2)/2;
mesh.z = 0 : mesh_res(3) : length;
CSX = DefineRectGrid(CSX, 1e-3,mesh);

%%%fake pml
finalKappa = 0.3/abs_length^4;
finalSigma = finalKappa*MUE0/EPS0;
CSX = AddMaterial(CSX,'pml');
CSX = SetMaterialProperty(CSX,'pml','Kappa',finalKappa);
CSX = SetMaterialProperty(CSX,'pml','Sigma',finalSigma);
CSX = SetMaterialWeight(CSX,'pml','Kappa',['pow(abs(z)-' num2str(length-abs_length) ',4)']);
CSX = SetMaterialWeight(CSX,'pml','Sigma',['pow(abs(z)-' num2str(length-abs_length) ',4)']);

start = [rad_i mesh.y(1) length-abs_length];
stop = [rad_a mesh.y(end) length];
CSX = AddBox(CSX,'pml',0 ,start,stop);

start = [rad_i mesh.y(1) 0];
stop = [rad_a mesh.y(end) 0];

CSX = AddExcitation(CSX,'excite',0,[1 0 0]);
weight{1} = '1/rho';
weight{2} = 0;
weight{3} = 0;
CSX = SetExcitationWeight(CSX, 'excite', weight );
CSX = AddBox(CSX,'excite',0 ,start,stop);
 
%dump
CSX = AddDump(CSX,'Et_','DumpMode',2);
start = [mesh.x(1) , 0 , mesh.z(1)];
stop = [mesh.x(end) , 0 , mesh.z(end)];
CSX = AddBox(CSX,'Et_',0 , start,stop);

CSX = AddDump(CSX,'Ht_','DumpType',1,'DumpMode',2);
CSX = AddBox(CSX,'Ht_',0,start,stop);

% voltage calc (take a voltage average to be at the same spot as the
% current calculation)
CSX = AddProbe(CSX,'ut1_1',0);
start = [ rad_i 0 port_dist ];stop = [ rad_a 0 port_dist ];
CSX = AddBox(CSX,'ut1_1', 0 ,start,stop);
CSX = AddProbe(CSX,'ut1_2',0);
start = [ rad_i 0 port_dist+mesh_res(3) ];stop = [ rad_a 0 port_dist+mesh_res(3) ];
CSX = AddBox(CSX,'ut1_2', 0 ,start,stop);

% current calc
CSX = AddProbe(CSX,'it1',1);
mid = 0.5*(rad_i+rad_a);
start = [ 0 mesh.y(1) port_dist ];stop = [ mid mesh.y(end) port_dist ];
CSX = AddBox(CSX,'it1', 0 ,start,stop);

%Write openEMS compatoble xml-file
WriteOpenEMS([Sim_Path '/' Sim_CSX],FDTD,CSX);

%cd to working dir and run openEMS
savePath = pwd();
cd(Sim_Path); %cd to working dir
command = [openEMS_Path 'openEMS.sh ' Sim_CSX ' ' openEMS_opts];
disp(command);
system(command)
cd(savePath);

UI = ReadUI({'ut1_1','ut1_2','it1'},'tmp/');
u_f = (UI.FD{1}.val + UI.FD{2}.val)/2; %averaging voltages to fit current
i_f = UI.FD{3}.val / partial;
Z = u_f./i_f;
plot(UI.FD{1}.f,real(Z),'Linewidth',2);
hold on;
grid on;
plot(UI.FD{1}.f,imag(Z),'r','Linewidth',2);
xlim([0 2*f0]);