function RunOpenEMS_MPI(Sim_Path, Sim_File, opts, Settings) % function RunOpenEMS_MPI(Sim_Path, Sim_File, NrProc, opts, Settings) % % Run an openEMS simulation with MPI support % % % mpi binary path on all nodes needed % Settings.MPI.Binary = '~/devel/openEMS/openEMS_MPI'; % % number of processes to run % Settings.MPI.NrProc = 2; % % % optional: % % define a hostfile and number of host to boot the mpd daemon: % Settings.MPI.HostFile = '/home/thorsten/ate-pc9x.hosts'; % Settings.MPI.TotalNum = 2; % % RunOpenEMS_MPI(Sim_Path, Sim_File, NrProc, opts, Settings) % % See also WriteOpenEMS, RunOpenEMS % % openEMS matlab interface % ----------------------- % author: Thorsten Liebig if (isunix ~= 1) error 'MPI version of openEMS currently only available using Linux' end if nargin < 4 error 'missing arguments: specify the Sim_Path, Sim_file, opts and Settings...' end NrProc = Settings.MPI.NrProc; if (NrProc<2) error('openEMS:RunOpenEMS_MPI','MPI number of processes to small...'); end if ~isfield(Settings,'MPI') error('openEMS:RunOpenEMS_MPI','MPI settings not found...'); end savePath = pwd; cd(Sim_Path); scp_options = '-C -o "PasswordAuthentication no" -o "StrictHostKeyChecking no"'; ssh_options = [scp_options ' -x']; Remote_Nodes = Settings.MPI.Hosts; HostList = ''; for n=1:numel(Remote_Nodes) remote_name = Remote_Nodes{n}; if (n==1) [status, result] = unix(['ssh ' ssh_options ' ' remote_name ' "mktemp -d /tmp/openEMS_MPI_XXXXXXXXXXXX"']); if (status~=0) disp(result); error('openEMS:RunOpenEMS','mktemp failed to create tmp directory!'); end work_path = strtrim(result); %remove tailing \n HostList = remote_name; else [status, result] = unix(['ssh ' ssh_options ' ' remote_name ' "mkdir ' work_path '"']); if (status~=0) disp(result); error('openEMS:RunOpenEMS',['mkdir failed to create tmp directory on remote ' remote_name ' !']); end HostList = [HostList ',' remote_name]; end [stat, res] = unix(['scp ' scp_options ' * ' remote_name ':' work_path '/']); if (stat~=0) disp(res); error('openEMS:RunOpenEMS',['scp to remote ' remote_name ' failed!']); end end %run openEMS (with log file if requested) if isfield(Settings,'LogFile') append_unix = [' 2>&1 | tee ' Settings.LogFile]; else append_unix = []; end disp(['Running remote openEMS_MPI in working dir: ' work_path]); if ~isfield(Settings.MPI,'GlobalArgs') Settings.MPI.GlobalArgs = ''; end if isfield(Settings.MPI,'Hosts') [status] = system(['mpiexec -host ' HostList ' -n ' int2str(NrProc) ' -wdir ' work_path ' ' Settings.MPI.Binary ' ' Sim_File ' ' opts ' ' append_unix]); else [status] = system(['mpiexec ' Settings.MPI.GlobalArgs ' -n ' int2str(NrProc) ' -wdir ' work_path ' ' Settings.MPI.Binary ' ' Sim_File ' ' opts ' ' append_unix]); end if (status~=0) error('openEMS:RunOpenEMS','mpirun openEMS failed!'); end disp( 'Remote simulation done... copying back results and cleaning up...' ); if (strncmp(work_path,'/tmp/',5)~=1) % savety precaution... error('openEMS:RunOpenEMS','working path invalid for deletion'); end for n=1:numel(Remote_Nodes) remote_name = Remote_Nodes{n}; disp(['Copy data from remote node: ' remote_name]); [stat, res] = unix(['scp -r ' scp_options ' ' remote_name ':' work_path '/* ' pwd '/']); if (stat~=0); disp(res); error('openEMS:RunOpenEMS','remote scp failed!'); end %cleanup [stat, res] = unix(['ssh ' ssh_options ' ' remote_name ' rm -r ' work_path]); if (stat~=0); disp(res); warning('openEMS:RunOpenEMS','remote cleanup failed!'); end end cd(savePath);