300 lines
9.0 KiB
C++
300 lines
9.0 KiB
C++
|
/***********************************************************************
|
||
|
* Software License Agreement (BSD License)
|
||
|
*
|
||
|
* Copyright 2008-2009 Marius Muja (mariusm@cs.ubc.ca). All rights reserved.
|
||
|
* Copyright 2008-2009 David G. Lowe (lowe@cs.ubc.ca). All rights reserved.
|
||
|
*
|
||
|
* THE BSD LICENSE
|
||
|
*
|
||
|
* Redistribution and use in source and binary forms, with or without
|
||
|
* modification, are permitted provided that the following conditions
|
||
|
* are met:
|
||
|
*
|
||
|
* 1. Redistributions of source code must retain the above copyright
|
||
|
* notice, this list of conditions and the following disclaimer.
|
||
|
* 2. Redistributions in binary form must reproduce the above copyright
|
||
|
* notice, this list of conditions and the following disclaimer in the
|
||
|
* documentation and/or other materials provided with the distribution.
|
||
|
*
|
||
|
* THIS SOFTWARE IS PROVIDED BY THE AUTHOR ``AS IS'' AND ANY EXPRESS OR
|
||
|
* IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES
|
||
|
* OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.
|
||
|
* IN NO EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT,
|
||
|
* INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT
|
||
|
* NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
|
||
|
* DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
|
||
|
* THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
|
||
|
* (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF
|
||
|
* THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
|
||
|
*************************************************************************/
|
||
|
|
||
|
#ifndef OPENCV_FLANN_BASE_HPP_
|
||
|
#define OPENCV_FLANN_BASE_HPP_
|
||
|
|
||
|
//! @cond IGNORED
|
||
|
|
||
|
#include <vector>
|
||
|
#include <cstdio>
|
||
|
|
||
|
#include "general.h"
|
||
|
#include "matrix.h"
|
||
|
#include "params.h"
|
||
|
#include "saving.h"
|
||
|
|
||
|
#include "all_indices.h"
|
||
|
|
||
|
namespace cvflann
|
||
|
{
|
||
|
|
||
|
/**
|
||
|
* Sets the log level used for all flann functions
|
||
|
* @param level Verbosity level
|
||
|
*/
|
||
|
inline void log_verbosity(int level)
|
||
|
{
|
||
|
if (level >= 0) {
|
||
|
Logger::setLevel(level);
|
||
|
}
|
||
|
}
|
||
|
|
||
|
/**
|
||
|
* (Deprecated) Index parameters for creating a saved index.
|
||
|
*/
|
||
|
struct SavedIndexParams : public IndexParams
|
||
|
{
|
||
|
SavedIndexParams(cv::String filename)
|
||
|
{
|
||
|
(* this)["algorithm"] = FLANN_INDEX_SAVED;
|
||
|
(*this)["filename"] = filename;
|
||
|
}
|
||
|
};
|
||
|
|
||
|
|
||
|
template<typename Distance>
|
||
|
NNIndex<Distance>* load_saved_index(const Matrix<typename Distance::ElementType>& dataset, const cv::String& filename, Distance distance)
|
||
|
{
|
||
|
typedef typename Distance::ElementType ElementType;
|
||
|
|
||
|
FILE* fin = fopen(filename.c_str(), "rb");
|
||
|
if (fin == NULL) {
|
||
|
return NULL;
|
||
|
}
|
||
|
IndexHeader header = load_header(fin);
|
||
|
if (header.data_type != Datatype<ElementType>::type()) {
|
||
|
fclose(fin);
|
||
|
FLANN_THROW(cv::Error::StsError, "Datatype of saved index is different than of the one to be created.");
|
||
|
}
|
||
|
if ((size_t(header.rows) != dataset.rows)||(size_t(header.cols) != dataset.cols)) {
|
||
|
fclose(fin);
|
||
|
FLANN_THROW(cv::Error::StsError, "The index saved belongs to a different dataset");
|
||
|
}
|
||
|
|
||
|
IndexParams params;
|
||
|
params["algorithm"] = header.index_type;
|
||
|
NNIndex<Distance>* nnIndex = create_index_by_type<Distance>(dataset, params, distance);
|
||
|
nnIndex->loadIndex(fin);
|
||
|
fclose(fin);
|
||
|
|
||
|
return nnIndex;
|
||
|
}
|
||
|
|
||
|
|
||
|
template<typename Distance>
|
||
|
class Index : public NNIndex<Distance>
|
||
|
{
|
||
|
public:
|
||
|
typedef typename Distance::ElementType ElementType;
|
||
|
typedef typename Distance::ResultType DistanceType;
|
||
|
|
||
|
Index(const Matrix<ElementType>& features, const IndexParams& params, Distance distance = Distance() )
|
||
|
: index_params_(params)
|
||
|
{
|
||
|
flann_algorithm_t index_type = get_param<flann_algorithm_t>(params,"algorithm");
|
||
|
loaded_ = false;
|
||
|
|
||
|
if (index_type == FLANN_INDEX_SAVED) {
|
||
|
nnIndex_ = load_saved_index<Distance>(features, get_param<cv::String>(params,"filename"), distance);
|
||
|
loaded_ = true;
|
||
|
}
|
||
|
else {
|
||
|
nnIndex_ = create_index_by_type<Distance>(features, params, distance);
|
||
|
}
|
||
|
}
|
||
|
|
||
|
~Index()
|
||
|
{
|
||
|
delete nnIndex_;
|
||
|
}
|
||
|
|
||
|
/**
|
||
|
* Builds the index.
|
||
|
*/
|
||
|
void buildIndex() CV_OVERRIDE
|
||
|
{
|
||
|
if (!loaded_) {
|
||
|
nnIndex_->buildIndex();
|
||
|
}
|
||
|
}
|
||
|
|
||
|
void save(cv::String filename)
|
||
|
{
|
||
|
FILE* fout = fopen(filename.c_str(), "wb");
|
||
|
if (fout == NULL) {
|
||
|
FLANN_THROW(cv::Error::StsError, "Cannot open file");
|
||
|
}
|
||
|
save_header(fout, *nnIndex_);
|
||
|
saveIndex(fout);
|
||
|
fclose(fout);
|
||
|
}
|
||
|
|
||
|
/**
|
||
|
* \brief Saves the index to a stream
|
||
|
* \param stream The stream to save the index to
|
||
|
*/
|
||
|
virtual void saveIndex(FILE* stream) CV_OVERRIDE
|
||
|
{
|
||
|
nnIndex_->saveIndex(stream);
|
||
|
}
|
||
|
|
||
|
/**
|
||
|
* \brief Loads the index from a stream
|
||
|
* \param stream The stream from which the index is loaded
|
||
|
*/
|
||
|
virtual void loadIndex(FILE* stream) CV_OVERRIDE
|
||
|
{
|
||
|
nnIndex_->loadIndex(stream);
|
||
|
}
|
||
|
|
||
|
/**
|
||
|
* \returns number of features in this index.
|
||
|
*/
|
||
|
size_t veclen() const CV_OVERRIDE
|
||
|
{
|
||
|
return nnIndex_->veclen();
|
||
|
}
|
||
|
|
||
|
/**
|
||
|
* \returns The dimensionality of the features in this index.
|
||
|
*/
|
||
|
size_t size() const CV_OVERRIDE
|
||
|
{
|
||
|
return nnIndex_->size();
|
||
|
}
|
||
|
|
||
|
/**
|
||
|
* \returns The index type (kdtree, kmeans,...)
|
||
|
*/
|
||
|
flann_algorithm_t getType() const CV_OVERRIDE
|
||
|
{
|
||
|
return nnIndex_->getType();
|
||
|
}
|
||
|
|
||
|
/**
|
||
|
* \returns The amount of memory (in bytes) used by the index.
|
||
|
*/
|
||
|
virtual int usedMemory() const CV_OVERRIDE
|
||
|
{
|
||
|
return nnIndex_->usedMemory();
|
||
|
}
|
||
|
|
||
|
|
||
|
/**
|
||
|
* \returns The index parameters
|
||
|
*/
|
||
|
IndexParams getParameters() const CV_OVERRIDE
|
||
|
{
|
||
|
return nnIndex_->getParameters();
|
||
|
}
|
||
|
|
||
|
/**
|
||
|
* \brief Perform k-nearest neighbor search
|
||
|
* \param[in] queries The query points for which to find the nearest neighbors
|
||
|
* \param[out] indices The indices of the nearest neighbors found
|
||
|
* \param[out] dists Distances to the nearest neighbors found
|
||
|
* \param[in] knn Number of nearest neighbors to return
|
||
|
* \param[in] params Search parameters
|
||
|
*/
|
||
|
void knnSearch(const Matrix<ElementType>& queries, Matrix<int>& indices, Matrix<DistanceType>& dists, int knn, const SearchParams& params) CV_OVERRIDE
|
||
|
{
|
||
|
nnIndex_->knnSearch(queries, indices, dists, knn, params);
|
||
|
}
|
||
|
|
||
|
/**
|
||
|
* \brief Perform radius search
|
||
|
* \param[in] query The query point
|
||
|
* \param[out] indices The indinces of the neighbors found within the given radius
|
||
|
* \param[out] dists The distances to the nearest neighbors found
|
||
|
* \param[in] radius The radius used for search
|
||
|
* \param[in] params Search parameters
|
||
|
* \returns Number of neighbors found
|
||
|
*/
|
||
|
int radiusSearch(const Matrix<ElementType>& query, Matrix<int>& indices, Matrix<DistanceType>& dists, float radius, const SearchParams& params) CV_OVERRIDE
|
||
|
{
|
||
|
return nnIndex_->radiusSearch(query, indices, dists, radius, params);
|
||
|
}
|
||
|
|
||
|
/**
|
||
|
* \brief Method that searches for nearest-neighbours
|
||
|
*/
|
||
|
void findNeighbors(ResultSet<DistanceType>& result, const ElementType* vec, const SearchParams& searchParams) CV_OVERRIDE
|
||
|
{
|
||
|
nnIndex_->findNeighbors(result, vec, searchParams);
|
||
|
}
|
||
|
|
||
|
/**
|
||
|
* \brief Returns actual index
|
||
|
*/
|
||
|
CV_DEPRECATED NNIndex<Distance>* getIndex()
|
||
|
{
|
||
|
return nnIndex_;
|
||
|
}
|
||
|
|
||
|
/**
|
||
|
* \brief Returns index parameters.
|
||
|
* \deprecated use getParameters() instead.
|
||
|
*/
|
||
|
CV_DEPRECATED const IndexParams* getIndexParameters()
|
||
|
{
|
||
|
return &index_params_;
|
||
|
}
|
||
|
|
||
|
private:
|
||
|
/** Pointer to actual index class */
|
||
|
NNIndex<Distance>* nnIndex_;
|
||
|
/** Indices if the index was loaded from a file */
|
||
|
bool loaded_;
|
||
|
/** Parameters passed to the index */
|
||
|
IndexParams index_params_;
|
||
|
|
||
|
Index(const Index &); // copy disabled
|
||
|
Index& operator=(const Index &); // assign disabled
|
||
|
};
|
||
|
|
||
|
/**
|
||
|
* Performs a hierarchical clustering of the points passed as argument and then takes a cut in the
|
||
|
* the clustering tree to return a flat clustering.
|
||
|
* @param[in] points Points to be clustered
|
||
|
* @param centers The computed cluster centres. Matrix should be preallocated and centers.rows is the
|
||
|
* number of clusters requested.
|
||
|
* @param params Clustering parameters (The same as for cvflann::KMeansIndex)
|
||
|
* @param d Distance to be used for clustering (eg: cvflann::L2)
|
||
|
* @return number of clusters computed (can be different than clusters.rows and is the highest number
|
||
|
* of the form (branching-1)*K+1 smaller than clusters.rows).
|
||
|
*/
|
||
|
template <typename Distance>
|
||
|
int hierarchicalClustering(const Matrix<typename Distance::ElementType>& points, Matrix<typename Distance::CentersType>& centers,
|
||
|
const KMeansIndexParams& params, Distance d = Distance())
|
||
|
{
|
||
|
KMeansIndex<Distance> kmeans(points, params, d);
|
||
|
kmeans.buildIndex();
|
||
|
|
||
|
int clusterNum = kmeans.getClusterCenters(centers);
|
||
|
return clusterNum;
|
||
|
}
|
||
|
|
||
|
}
|
||
|
|
||
|
//! @endcond
|
||
|
|
||
|
#endif /* OPENCV_FLANN_BASE_HPP_ */
|